{
  "_id": "6a1f3043b401979e734277b5",
  "Package": "shinyCox",
  "Title": "Create 'shiny' Applications for Cox Proportional Hazards Models",
  "Version": "1.1.3",
  "Authors@R": "c(\nperson(\"Harrison\", \"Clement\",\nemail = \"harrisonclement16@gmail.com\", role = c(\"aut\", \"cre\")),\nperson(\"Subodh\", \"Selukar\",\nemail = \"subodh.selukar@stjude.org\", role = \"aut\"),\nperson(\"Stanley\", \"Pounds\",\nemail = \"stanley.pounds@stjude.org\", role = \"aut\"),\nperson(\"St Jude Children's Research Hospital\", role = \"fnd\"))",
  "Description": "Takes one or more fitted Cox proportional hazards models\nand writes a 'shiny' application to a directory specified by\nthe user. The 'shiny' application displays predicted survival\ncurves based on user input, and contains none of the original\ndata used to create the Cox model or models. The goal is\ntowards visualization and presentation of predicted survival\ncurves.",
  "License": "LGPL (>= 3)",
  "URL": "https://github.com/harryc598/shinyCox",
  "BugReports": "https://github.com/harryc598/shinyCox/issues",
  "Config/testthat/edition": "3",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.3.2",
  "Config/pak/sysreqs": "cmake make libuv1-dev zlib1g-dev",
  "Repository": "https://harryc598.r-universe.dev",
  "Date/Publication": "2025-02-01 04:07:01 UTC",
  "RemoteUrl": "https://github.com/harryc598/shinycox",
  "RemoteRef": "HEAD",
  "RemoteSha": "f464a459e52b8fd75b89a718e7d0a05e9f3faf93",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-15 08:52:16 UTC",
    "User": "root"
  },
  "Author": "Harrison Clement [aut, cre],\nSubodh Selukar [aut],\nStanley Pounds [aut],\nSt Jude Children's Research Hospital [fnd]",
  "Maintainer": "Harrison Clement <harrisonclement16@gmail.com>",
  "MD5sum": "7048d7a94bd4b5f3962494bb064fb30d",
  "_user": "harryc598",
  "_type": "src",
  "_file": "shinyCox_1.1.3.tar.gz",
  "_fileid": "32570c18b4f7f4ed35c48698fd3e53dbd9a1f372235e6de9fcc83522d08a3335",
  "_filesize": 143357,
  "_sha256": "32570c18b4f7f4ed35c48698fd3e53dbd9a1f372235e6de9fcc83522d08a3335",
  "_created": "2026-05-15T08:52:16.000Z",
  "_published": "2026-06-02T19:34:27.545Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 79155670497,
      "time": 130,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7013484982"
    },
    {
      "job": 79155670941,
      "time": 146,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7013489230"
    },
    {
      "job": 79155670939,
      "time": 158,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7013486645"
    },
    {
      "job": 79155670624,
      "time": 195,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7013491510"
    },
    {
      "job": 79155669576,
      "time": 210,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7013447655"
    },
    {
      "job": 79155669929,
      "time": 116,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7367887507"
    },
    {
      "job": 79155670775,
      "time": 139,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7013489360"
    },
    {
      "job": 79155671209,
      "time": 89,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7013473400"
    },
    {
      "job": 79155670667,
      "time": 108,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7013479219"
    }
  ],
  "_buildurl": "https://github.com/r-universe/harryc598/actions/runs/25908976588",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/harryc598/shinycox",
  "_commit": {
    "id": "f464a459e52b8fd75b89a718e7d0a05e9f3faf93",
    "author": "harryc598 <harrisonclement16@gmail.com>",
    "committer": "harryc598 <harrisonclement16@gmail.com>",
    "message": "Version change\n",
    "time": 1738382821
  },
  "_maintainer": {
    "name": "Harrison Clement",
    "email": "harrisonclement16@gmail.com"
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "shiny",
      "role": "Imports"
    },
    {
      "package": "survival",
      "version": ">= 3.3",
      "role": "Imports"
    },
    {
      "package": "DT",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "shinydashboard",
      "role": "Suggests"
    }
  ],
  "_owner": "harryc598",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 1,
  "_contributors": [
    {
      "user": "harryc598",
      "count": 104,
      "uuid": 66840256
    }
  ],
  "_userbio": {
    "uuid": 66840256,
    "type": "user",
    "name": "harryc598"
  },
  "_downloads": {
    "count": 201,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/shinyCox"
  },
  "_devurl": "https://github.com/harryc598/shinycox",
  "_searchresults": 10,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "extra/shinyCox.html",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/harryc598/shinycox",
  "_realowner": "harryc598",
  "_cranurl": true,
  "_releases": [
    {
      "version": "1.0.1",
      "date": "2023-08-24"
    },
    {
      "version": "1.1.0",
      "date": "2024-05-30"
    },
    {
      "version": "1.1.1",
      "date": "2024-10-06"
    },
    {
      "version": "1.1.2",
      "date": "2024-12-08"
    },
    {
      "version": "1.1.3",
      "date": "2025-02-01"
    }
  ],
  "_exports": [
    "cox_KM_plots",
    "cox_times_table",
    "get_confint",
    "make_coxph",
    "predict_one_coxfit",
    "predict_se",
    "prep_coxfit",
    "shine_coxph",
    "surv_pred_info"
  ],
  "_help": [
    {
      "page": "cox_KM_plots",
      "title": "Generate Cox-model predicted Kaplan-Meier plots",
      "topics": [
        "cox_KM_plots"
      ]
    },
    {
      "page": "cox_times_table",
      "title": "Create table of Cox-model predicted probabilities",
      "topics": [
        "cox_times_table"
      ]
    },
    {
      "page": "get_confint",
      "title": "Get confidence intervals for predicted survival curves",
      "topics": [
        "get_confint"
      ]
    },
    {
      "page": "make_coxph",
      "title": "Wrapper to create 'survival::coxph()' object suitable for 'shine_coxph()'",
      "topics": [
        "make_coxph"
      ]
    },
    {
      "page": "predict_one_coxfit",
      "title": "Compute Cox-model predicted survival function",
      "topics": [
        "predict_one_coxfit"
      ]
    },
    {
      "page": "predict_se",
      "title": "Creates predicted survival and standard errors for confidence intervals",
      "topics": [
        "predict_se"
      ]
    },
    {
      "page": "prep_coxfit",
      "title": "Create simplified 'coxph()' object for shiny app",
      "topics": [
        "prep_coxfit"
      ]
    },
    {
      "page": "shine_coxph",
      "title": "Generates a shiny app for predictions from Cox model(s)",
      "topics": [
        "shine_coxph"
      ]
    },
    {
      "page": "surv_pred_info",
      "title": "Obtains information for standard errors of predictions",
      "topics": [
        "surv_pred_info"
      ]
    }
  ],
  "_readme": "https://github.com/harryc598/shinycox/raw/HEAD/README.md",
  "_rundeps": [
    "base64enc",
    "bslib",
    "cachem",
    "cli",
    "commonmark",
    "digest",
    "fastmap",
    "fontawesome",
    "fs",
    "glue",
    "htmltools",
    "httpuv",
    "jquerylib",
    "jsonlite",
    "later",
    "lattice",
    "lifecycle",
    "magrittr",
    "Matrix",
    "memoise",
    "mime",
    "otel",
    "promises",
    "R6",
    "rappdirs",
    "Rcpp",
    "rlang",
    "sass",
    "shiny",
    "sourcetools",
    "survival",
    "withr",
    "xtable"
  ],
  "_score": 2.6989700043360187,
  "_indexed": true,
  "_nocasepkg": "shinycox",
  "_universes": [
    "harryc598"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.1.3",
      "date": "2026-05-15T08:54:17.000Z",
      "distro": "noble",
      "commit": "f464a459e52b8fd75b89a718e7d0a05e9f3faf93",
      "fileid": "971241309d0e39361e1bb51695fed2ac7444895518032c3a5f6271e1e947b889",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/harryc598/actions/runs/25908976588"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.1.3",
      "date": "2026-05-15T08:54:30.000Z",
      "distro": "noble",
      "commit": "f464a459e52b8fd75b89a718e7d0a05e9f3faf93",
      "fileid": "4ad305251d7c15f226b782c64ec155fb19ecc1f90da60aa0a8811b5aefda3d2d",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/harryc598/actions/runs/25908976588"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.1.3",
      "date": "2026-05-15T08:54:32.000Z",
      "commit": "f464a459e52b8fd75b89a718e7d0a05e9f3faf93",
      "fileid": "1e6c91a3553015ca707a5d85da94609e06bb61625341c82b22830ac3f8f3f529",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/harryc598/actions/runs/25908976588"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.1.3",
      "date": "2026-05-15T08:54:39.000Z",
      "commit": "f464a459e52b8fd75b89a718e7d0a05e9f3faf93",
      "fileid": "06352a243b0fcf1bd37f2587d2f25867f0f4cc05a8041cd8ab491a14943e94d8",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/harryc598/actions/runs/25908976588"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.1.3",
      "date": "2026-05-15T08:54:26.000Z",
      "commit": "f464a459e52b8fd75b89a718e7d0a05e9f3faf93",
      "fileid": "5dcfeec3ba6ac9d0d2556e6ae17775bfecf43df69d7d86d36c141472452cbb0f",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/harryc598/actions/runs/25908976588"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.1.3",
      "date": "2026-05-15T08:53:27.000Z",
      "commit": "f464a459e52b8fd75b89a718e7d0a05e9f3faf93",
      "fileid": "34e50adb850baa06c2ded2b59e2da0b8c5b6e95140aed84f0e4785516c796a25",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/harryc598/actions/runs/25908976588"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.1.3",
      "date": "2026-05-15T08:53:46.000Z",
      "commit": "f464a459e52b8fd75b89a718e7d0a05e9f3faf93",
      "fileid": "a9a3b773aa137e570075756d9c00f8678a89b61bb99cd2ce9e5622ad8b109860",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/harryc598/actions/runs/25908976588"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.1.3",
      "date": "2026-06-02T19:34:10.000Z",
      "commit": "f464a459e52b8fd75b89a718e7d0a05e9f3faf93",
      "fileid": "77b2de097f3b8ff022e30c80d02e5234376ecf9986154347a34ee9fdc9252aaf",
      "status": "success",
      "buildurl": "https://github.com/r-universe/harryc598/actions/runs/25908976588"
    }
  ]
}